Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ywbe family protein | PHEP_RS20125 | Not Available | Negative | 4879043 - 4879243 | 7320.98 |
| excinuclease abc subunit uvrb | PHEP_RS20130 | Not Available | Negative | 4879252 - 4881291 | 77822.4 |
| duf7033 domain-containing protein | PHEP_RS20135 | Not Available | Positive | 4881366 - 4882403 | 39396.6 |
| uracil phosphoribosyltransferase | PHEP_RS20140 | Not Available | Positive | 4882384 - 4883028 | 23619.0 |
| yjjg family noncanonical pyrimidine nucleotidase | PHEP_RS20145 | Not Available | Positive | 4883058 - 4883747 | 26860.0 |
| flippase | PHEP_RS20150 | Not Available | Positive | 4883784 - 4885118 | 49464.8 |
| class i sam-dependent methyltransferase | PHEP_RS20155 | Not Available | Positive | 4885199 - 4885825 | 23980.7 |
| fkbm family methyltransferase | PHEP_RS20160 | Not Available | Positive | 4885828 - 4886472 | 24065.9 |
| glycosyltransferase | PHEP_RS20165 | Not Available | Positive | 4886505 - 4887404 | 34543.2 |
| rhomboid family intramembrane serine protease | PHEP_RS20170 | Not Available | Negative | 4887408 - 4888949 | 58586.6 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
