Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | PHEP_RS20025 | Not Available | Negative | 4858597 - 4859376 | 27585.0 |
| amidohydrolase family protein | PHEP_RS20030 | Not Available | Negative | 4859390 - 4860220 | 31824.9 |
| fumarylacetoacetate hydrolase family protein | PHEP_RS20035 | Not Available | Negative | 4860207 - 4861064 | 31154.1 |
| sdr family nad(p)-dependent oxidoreductase | PHEP_RS20040 | Not Available | Negative | 4861111 - 4861875 | 26629.0 |
| uxaa family hydrolase | PHEP_RS20045 | Not Available | Negative | 4861885 - 4863543 | 59926.9 |
| l-rhamnose mutarotase | PHEP_RS20050 | Not Available | Negative | 4863543 - 4863881 | 13115.9 |
| l-fucose:h+ symporter permease | PHEP_RS20055 | Not Available | Negative | 4863874 - 4865127 | 45170.8 |
| glucose-1-phosphate thymidylyltransferase rfba | PHEP_RS20060 | Not Available | Negative | 4865268 - 4866128 | 31579.5 |
| duf3109 family protein | PHEP_RS20065 | Not Available | Negative | 4866157 - 4866735 | 21563.7 |
| duf3108 domain-containing protein | PHEP_RS20070 | Not Available | Negative | 4866766 - 4867542 | 29497.7 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
