Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS19975 | Not Available | Negative | 4836635 - 4838122 | 55304.6 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS19980 | Not Available | Negative | 4838145 - 4841207 | 112519.0 |
| hypothetical protein | PHEP_RS19985 | Not Available | Negative | 4841204 - 4843711 | 95474.6 |
| two-component regulator propeller domain-containing protein | PHEP_RS19990 | Not Available | Negative | 4843794 - 4847918 | 155721.0 |
| redoxin family protein | PHEP_RS19995 | Not Available | Negative | 4848111 - 4850021 | 70926.9 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS20000 | Not Available | Negative | 4850033 - 4851475 | 53547.8 |
| tonb-dependent receptor | PHEP_RS20005 | Not Available | Negative | 4851495 - 4854728 | 118653.0 |
| fecr family protein | PHEP_RS20010 | Not Available | Negative | 4854960 - 4855961 | 37603.2 |
| rna polymerase sigma factor | PHEP_RS20015 | Not Available | Negative | 4856049 - 4856630 | 22149.8 |
| aminopeptidase p family protein | PHEP_RS20020 | Not Available | Positive | 4856820 - 4858595 | 65915.7 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
