Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS19925 | Not Available | Negative | 4822372 - 4823751 | 50995.2 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS19930 | Not Available | Negative | 4823764 - 4827276 | 128752.0 |
| fecr family protein | PHEP_RS19935 | Not Available | Negative | 4827501 - 4828634 | 41985.8 |
| rna polymerase sigma factor | PHEP_RS19940 | Not Available | Positive | 4828752 - 4829360 | 23146.2 |
| formyltetrahydrofolate deformylase | PHEP_RS19945 | Not Available | Negative | 4829427 - 4830251 | 30755.7 |
| eama family transporter | PHEP_RS19950 | Not Available | Positive | 4830365 - 4831330 | 35029.7 |
| gdp-mannose 4,6-dehydratase | PHEP_RS19955 | Not Available | Negative | 4831318 - 4832454 | 43054.7 |
| hypothetical protein | PHEP_RS19960 | Not Available | Negative | 4832492 - 4834228 | 64586.2 |
| mfs transporter | PHEP_RS19965 | Not Available | Negative | 4834277 - 4835572 | 47855.2 |
| glycoside hydrolase family 130 protein | PHEP_RS19970 | Not Available | Negative | 4835562 - 4836620 | 39052.6 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
