Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome silencing factor | PHEP_RS00155 | Not Available | Negative | 35981 - 36355 | 14204.7 |
| biotin--[acetyl-coa-carboxylase] ligase | PHEP_RS00160 | Not Available | Positive | 36439 - 37173 | 27284.7 |
| 6-phosphofructokinase | PHEP_RS00165 | Not Available | Positive | 37232 - 38215 | 35130.5 |
| ybjq family protein | PHEP_RS00170 | Not Available | Negative | 38246 - 38569 | 11176.5 |
| 30s ribosomal protein s16 | PHEP_RS00175 | Not Available | Positive | 38755 - 39369 | 21950.7 |
| ribosome maturation factor rimm | PHEP_RS00180 | Not Available | Positive | 39442 - 39969 | 20237.0 |
| trna (guanosine(37)-n1)-methyltransferase trmd | PHEP_RS00185 | Not Available | Positive | 39985 - 40662 | 25126.1 |
| hypothetical protein | PHEP_RS00190 | Not Available | Positive | 40897 - 41199 | 11905.9 |
| hypothetical protein | PHEP_RS00195 | Not Available | Positive | 41220 - 41492 | 10783.3 |
| 50s ribosomal protein l19 | PHEP_RS00200 | Not Available | Positive | 41639 - 41986 | 13077.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
