Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS19320 | Not Available | Negative | 4654484 - 4656190 | 64465.6 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS19325 | Not Available | Negative | 4656212 - 4659025 | 104589.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS19330 | Not Available | Negative | 4659063 - 4660826 | 67101.2 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS19335 | Not Available | Negative | 4660845 - 4663955 | 115378.0 |
| hypothetical protein | PHEP_RS19345 | Not Available | Positive | 4664457 - 4665170 | 24884.3 |
| type ix secretion system membrane protein porp/sprf | PHEP_RS19350 | Not Available | Negative | 4665251 - 4666138 | 32407.5 |
| gntr family transcriptional regulator | PHEP_RS19355 | Not Available | Negative | 4666760 - 4667791 | 39638.2 |
| fggy-family carbohydrate kinase | PHEP_RS19360 | Not Available | Negative | 4667812 - 4669215 | 52576.5 |
| tim barrel protein | PHEP_RS19365 | Not Available | Negative | 4669219 - 4670493 | 47223.4 |
| bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase | PHEP_RS19370 | Not Available | Negative | 4670505 - 4672625 | 76741.5 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
