Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dinb family protein | PHEP_RS19220 | Not Available | Positive | 4623741 - 4624238 | 19046.6 |
| 23s rrna pseudouridine(2604) synthase rluf | PHEP_RS19225 | Not Available | Positive | 4624309 - 4625355 | 37936.8 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | PHEP_RS19230 | Not Available | Positive | 4625388 - 4626434 | 39400.3 |
| comf family protein | PHEP_RS19235 | Not Available | Positive | 4626509 - 4627207 | 25799.8 |
| atp-binding protein | PHEP_RS21770 | Not Available | Negative | 4627531 - 4629924 | 89613.3 |
| serine hydroxymethyltransferase | PHEP_RS19245 | Not Available | Negative | 4629943 - 4631214 | 46154.8 |
| 1-deoxy-d-xylulose-5-phosphate synthase | PHEP_RS19250 | Not Available | Positive | 4631309 - 4633237 | 70759.1 |
| deor/glpr family dna-binding transcription regulator | PHEP_RS19255 | Not Available | Negative | 4633252 - 4634001 | 27371.0 |
| 5' nucleotidase, nt5c type | PHEP_RS19260 | Not Available | Positive | 4634091 - 4634645 | 21148.3 |
| polysaccharide lyase family 8 super-sandwich domain-containing protein | PHEP_RS19265 | Not Available | Negative | 4634604 - 4636574 | 73915.9 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
