Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramate dehydrogenase | PHEP_RS18475 | Not Available | Negative | 4415206 - 4416222 | 36687.1 |
| tetr/acrr family transcriptional regulator | PHEP_RS18480 | Not Available | Positive | 4416429 - 4417037 | 23372.6 |
| tetr/acrr family transcriptional regulator | PHEP_RS18485 | Not Available | Positive | 4417155 - 4417760 | 23089.1 |
| tolc family protein | PHEP_RS18490 | Not Available | Positive | 4417776 - 4419119 | 50075.7 |
| efflux rnd transporter periplasmic adaptor subunit | PHEP_RS18495 | Not Available | Positive | 4419116 - 4420180 | 37789.6 |
| efflux rnd transporter permease subunit | PHEP_RS18500 | Not Available | Positive | 4420187 - 4423378 | 116124.0 |
| hypothetical protein | PHEP_RS18505 | Not Available | Positive | 4423519 - 4424295 | 28967.5 |
| dihydrolipoyl dehydrogenase | PHEP_RS18510 | Not Available | Negative | 4424331 - 4425734 | 50095.9 |
| coce/nond family hydrolase | PHEP_RS18515 | Not Available | Positive | 4425825 - 4427702 | 71622.8 |
| m1 family metallopeptidase | PHEP_RS18520 | Not Available | Positive | 4427708 - 4429363 | 63102.9 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
