Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| single-stranded-dna-specific exonuclease recj | PHEP_RS18375 | Not Available | Positive | 4395806 - 4397509 | 63511.7 |
| lps export abc transporter atp-binding protein | PHEP_RS18380 | Not Available | Positive | 4397551 - 4398285 | 27544.6 |
| gh3 auxin-responsive promoter family protein | PHEP_RS18385 | Not Available | Positive | 4398307 - 4399815 | 58567.8 |
| cbs domain-containing protein | PHEP_RS18390 | Not Available | Positive | 4399941 - 4400369 | 15802.5 |
| m13 family metallopeptidase | PHEP_RS18395 | Not Available | Negative | 4400450 - 4402495 | 76207.6 |
| gyri-like domain-containing protein | PHEP_RS18400 | Not Available | Negative | 4402580 - 4403041 | 17037.9 |
| hypothetical protein | PHEP_RS18405 | Not Available | Negative | 4403131 - 4403313 | 6349.76 |
| metallophosphoesterase family protein | PHEP_RS18410 | Not Available | Positive | 4403513 - 4404640 | 42313.6 |
| rna polymerase sigma factor | PHEP_RS18415 | Not Available | Positive | 4404713 - 4405321 | 23850.7 |
| fecr family protein | PHEP_RS18420 | Not Available | Positive | 4405392 - 4406381 | 37127.5 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
