Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate isomerase/epimerase family protein | PHEP_RS18225 | Not Available | Positive | 4366983 - 4367861 | 32546.7 |
| aspartate-semialdehyde dehydrogenase | PHEP_RS18230 | Not Available | Positive | 4368016 - 4369008 | 36166.8 |
| d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase | PHEP_RS18235 | Not Available | Positive | 4369075 - 4370481 | 50603.7 |
| beta-n-acetylhexosaminidase | PHEP_RS18240 | Not Available | Positive | 4370530 - 4372497 | 73884.4 |
| trna pseudouridine(38-40) synthase trua | PHEP_RS18245 | Not Available | Positive | 4372510 - 4373319 | 31115.7 |
| doxx family protein | PHEP_RS18250 | Not Available | Positive | 4373409 - 4373864 | 16754.3 |
| shikimate kinase | PHEP_RS18255 | Not Available | Negative | 4373868 - 4374377 | 18937.1 |
| abc transporter permease | PHEP_RS18260 | Not Available | Negative | 4374378 - 4375433 | 39000.4 |
| bt_3928 family protein | PHEP_RS18265 | Not Available | Negative | 4375436 - 4376587 | 42840.7 |
| duf1599 domain-containing protein | PHEP_RS18270 | Not Available | Negative | 4376587 - 4377129 | 20618.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
