Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent epimerase/dehydratase family protein | PHEP_RS18175 | Not Available | Negative | 4356407 - 4357351 | 35349.2 |
| gluconate 2-dehydrogenase subunit 3 family protein | PHEP_RS18180 | Not Available | Positive | 4357622 - 4358311 | 25080.9 |
| gmc oxidoreductase | PHEP_RS18185 | Not Available | Positive | 4358333 - 4360036 | 63609.2 |
| gfo/idh/moca family protein | PHEP_RS18190 | Not Available | Positive | 4360039 - 4361196 | 42390.2 |
| sugar phosphate isomerase/epimerase family protein | PHEP_RS18195 | Not Available | Positive | 4361201 - 4362253 | 39326.4 |
| c-type cytochrome | PHEP_RS18200 | Not Available | Positive | 4362265 - 4362672 | 14389.4 |
| gfo/idh/moca family protein | PHEP_RS18205 | Not Available | Positive | 4362685 - 4364106 | 52448.5 |
| 3-keto-disaccharide hydrolase | PHEP_RS18210 | Not Available | Positive | 4364151 - 4364843 | 25744.5 |
| nucleoside permease | PHEP_RS18215 | Not Available | Positive | 4364876 - 4366078 | 44071.1 |
| hydroxypyruvate isomerase family protein | PHEP_RS18220 | Not Available | Positive | 4366091 - 4366972 | 32700.3 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
