Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| excinuclease abc subunit uvra | PHEP_RS17675 | Not Available | Negative | 4226820 - 4229627 | 104410.0 |
| rna polymerase sigma factor | PHEP_RS17680 | Not Available | Positive | 4229893 - 4230468 | 22677.5 |
| hypothetical protein | PHEP_RS17685 | Not Available | Positive | 4230602 - 4230793 | 7200.34 |
| endonuclease iii | PHEP_RS17690 | Not Available | Positive | 4230896 - 4231573 | 25417.9 |
| recombinase reca | PHEP_RS17695 | Not Available | Positive | 4231683 - 4232696 | 36210.8 |
| hypothetical protein | PHEP_RS17700 | Not Available | Negative | 4232753 - 4232974 | 8142.4 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | PHEP_RS17705 | Not Available | Negative | 4232986 - 4233987 | 35989.5 |
| translocation/assembly module tamb domain-containing protein | PHEP_RS17710 | Not Available | Positive | 4234141 - 4238505 | 162911.0 |
| bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase ii | PHEP_RS17715 | Not Available | Negative | 4238506 - 4239717 | 44187.3 |
| lptf/lptg family permease | PHEP_RS17720 | Not Available | Negative | 4239847 - 4241289 | 54261.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
