Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage tail sheath family protein | PHEP_RS17480 | Not Available | Positive | 4180530 - 4181792 | 45762.0 |
| lipid-a-disaccharide synthase | PHEP_RS17485 | Not Available | Negative | 4181723 - 4182853 | 42231.9 |
| hypothetical protein | PHEP_RS17490 | Not Available | Negative | 4182854 - 4183129 | 10475.3 |
| 5'/3'-nucleotidase sure | PHEP_RS17495 | Not Available | Negative | 4183137 - 4183982 | 30484.4 |
| m16 family metallopeptidase | PHEP_RS17500 | Not Available | Positive | 4184246 - 4187179 | 110439.0 |
| acetate--coa ligase | PHEP_RS17505 | Not Available | Negative | 4187250 - 4189148 | 70716.8 |
| helix-turn-helix domain-containing protein | PHEP_RS17510 | Not Available | Positive | 4189474 - 4190400 | 35522.5 |
| sigma-70 family rna polymerase sigma factor | PHEP_RS17515 | Not Available | Positive | 4190733 - 4191200 | 18109.7 |
| hypothetical protein | PHEP_RS17520 | Not Available | Positive | 4191190 - 4191708 | 20098.4 |
| 50s ribosomal protein l28 | PHEP_RS17525 | Not Available | Positive | 4191813 - 4192046 | 8869.97 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
