Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sh3 domain-containing protein | PHEP_RS17335 | Not Available | Positive | 4144978 - 4145400 | 15338.8 |
| acyl-coa desaturase | PHEP_RS17340 | Not Available | Negative | 4145466 - 4146200 | 29745.1 |
| phosphomannose isomerase | PHEP_RS17345 | Not Available | Negative | 4146219 - 4146716 | 18957.1 |
| hypothetical protein | PHEP_RS17350 | Not Available | Negative | 4146785 - 4147375 | 22822.9 |
| carboxypeptidase-like regulatory domain-containing protein | PHEP_RS22375 | Not Available | Positive | 4147637 - 4147915 | 10231.6 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS17355 | Not Available | Positive | 4147857 - 4150706 | 103255.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | PHEP_RS17360 | Not Available | Positive | 4150728 - 4152308 | 57472.4 |
| sulfatase | PHEP_RS17365 | Not Available | Negative | 4152384 - 4153991 | 60416.7 |
| hypothetical protein | PHEP_RS17370 | Not Available | Negative | 4154002 - 4155906 | 70230.5 |
| glycosyl hydrolase | PHEP_RS17375 | Not Available | Negative | 4156066 - 4159029 | 110236.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
