Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane beta-barrel protein | PHEP_RS17130 | Not Available | Negative | 4095228 - 4095917 | 26125.2 |
| protoporphyrinogen oxidase hemj | PHEP_RS17135 | Not Available | Negative | 4095983 - 4096531 | 21586.6 |
| uroporphyrinogen decarboxylase | PHEP_RS17140 | Not Available | Negative | 4096539 - 4097561 | 38047.4 |
| hypothetical protein | PHEP_RS17145 | Not Available | Negative | 4097587 - 4098102 | 19624.9 |
| response regulator transcription factor | PHEP_RS17150 | Not Available | Negative | 4098102 - 4098806 | 27368.4 |
| sensor histidine kinase | PHEP_RS17155 | Not Available | Negative | 4098809 - 4099675 | 32421.7 |
| glutamate-1-semialdehyde 2,1-aminomutase | PHEP_RS17160 | Not Available | Negative | 4099708 - 4101081 | 50046.1 |
| porphobilinogen synthase | PHEP_RS17165 | Not Available | Negative | 4101102 - 4102070 | 35845.2 |
| hydroxymethylbilane synthase | PHEP_RS17170 | Not Available | Negative | 4102078 - 4103658 | 59045.8 |
| glutamyl-trna reductase | PHEP_RS17175 | Not Available | Negative | 4103683 - 4104912 | 46805.2 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
