Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| merr family transcriptional regulator | PHEP_RS17085 | Not Available | Negative | 4086541 - 4087320 | 29975.3 |
| voc family protein | PHEP_RS17090 | Not Available | Negative | 4087369 - 4087551 | 6946.94 |
| hypothetical protein | PHEP_RS22100 | Not Available | Negative | 4087582 - 4087785 | 7315.18 |
| hypothetical protein | PHEP_RS22270 | Not Available | Negative | 4087782 - 4087946 | 5860.19 |
| pas domain-containing protein | PHEP_RS17100 | Not Available | Negative | 4088051 - 4088686 | 24463.6 |
| l-fucose:h+ symporter permease | PHEP_RS17105 | Not Available | Negative | 4088834 - 4090072 | 44712.4 |
| 3-dehydro-l-gulonate 2-dehydrogenase | PHEP_RS17110 | Not Available | Negative | 4090118 - 4091101 | 35428.7 |
| gnat family n-acetyltransferase | PHEP_RS17115 | Not Available | Negative | 4091124 - 4091432 | 11811.1 |
| duf5686 and carboxypeptidase-like regulatory domain-containing protein | PHEP_RS17120 | Not Available | Negative | 4091496 - 4094012 | 96462.5 |
| abc transporter atp-binding protein | PHEP_RS17125 | Not Available | Negative | 4094218 - 4095210 | 36617.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
