Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | PHEP_RS16730 | Not Available | Negative | 3988981 - 3992112 | 115001.0 |
| metallophosphoesterase family protein | PHEP_RS16735 | Not Available | Negative | 3992240 - 3993379 | 43386.2 |
| glycoside hydrolase family 99-like domain-containing protein | PHEP_RS16740 | Not Available | Negative | 3993400 - 3994446 | 39384.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | PHEP_RS16745 | Not Available | Negative | 3994458 - 3996059 | 60074.9 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS16750 | Not Available | Negative | 3996069 - 3999170 | 114170.0 |
| l-fucose:h+ symporter permease | PHEP_RS16755 | Not Available | Negative | 3999284 - 4000525 | 45217.3 |
| galactose oxidase | PHEP_RS16760 | Not Available | Negative | 4000625 - 4003144 | 97211.1 |
| pas domain s-box protein | PHEP_RS21730 | Not Available | Negative | 4003888 - 4005969 | 78565.5 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS16770 | Not Available | Positive | 4006695 - 4009805 | 112487.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS16775 | Not Available | Positive | 4009815 - 4011464 | 61735.9 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
