Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gtra family protein | PHEP_RS16280 | Not Available | Positive | 3884740 - 3885231 | 18883.6 |
| aromatic amino acid hydroxylase | PHEP_RS16285 | Not Available | Positive | 3885300 - 3887099 | 67731.8 |
| sdr family nad(p)-dependent oxidoreductase | PHEP_RS16290 | Not Available | Positive | 3887100 - 3887801 | 24877.3 |
| c40 family peptidase | PHEP_RS16295 | Not Available | Positive | 3887865 - 3888410 | 20057.2 |
| flavin reductase family protein | PHEP_RS16300 | Not Available | Negative | 3888431 - 3889318 | 32591.6 |
| fumarylacetoacetate hydrolase family protein | PHEP_RS16305 | Not Available | Negative | 3889322 - 3890320 | 36801.2 |
| anaerobic c4-dicarboxylate transporter family protein | PHEP_RS16310 | Not Available | Negative | 3890391 - 3891722 | 47191.5 |
| homogentisate 1,2-dioxygenase | PHEP_RS16315 | Not Available | Positive | 3892129 - 3893286 | 44223.5 |
| 4-hydroxyphenylpyruvate dioxygenase | PHEP_RS16320 | Not Available | Positive | 3893358 - 3894488 | 42671.4 |
| yihy/virulence factor brkb family protein | PHEP_RS16325 | Not Available | Positive | 3894614 - 3895534 | 34910.7 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
