Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | PHEP_RS15780 | Not Available | Negative | 3774855 - 3778187 | 122252.0 |
| fecr family protein | PHEP_RS15785 | Not Available | Negative | 3778390 - 3779529 | 42818.2 |
| rna polymerase sigma factor | PHEP_RS15790 | Not Available | Negative | 3779642 - 3780217 | 22559.4 |
| fe-s protein assembly co-chaperone hscb | PHEP_RS15795 | Not Available | Negative | 3780327 - 3780863 | 20759.9 |
| rip metalloprotease rsep | PHEP_RS15800 | Not Available | Negative | 3780867 - 3782201 | 49070.6 |
| 1-deoxy-d-xylulose-5-phosphate reductoisomerase | PHEP_RS15805 | Not Available | Negative | 3782238 - 3783389 | 41583.4 |
| gh3 auxin-responsive promoter family protein | PHEP_RS15810 | Not Available | Negative | 3783386 - 3784918 | 57406.2 |
| hypothetical protein | PHEP_RS15815 | Not Available | Negative | 3784925 - 3785710 | 30009.0 |
| glycosyltransferase | PHEP_RS15820 | Not Available | Negative | 3785707 - 3786675 | 37532.6 |
| glycosyltransferase family 2 protein | PHEP_RS15825 | Not Available | Negative | 3786679 - 3787635 | 36282.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
