Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsr/smtb family transcription factor | PHEP_RS15525 | Not Available | Positive | 3730674 - 3731015 | 13176.0 |
| srpbcc family protein | PHEP_RS15530 | Not Available | Positive | 3730999 - 3731490 | 18685.4 |
| lytr/algr family response regulator transcription factor | PHEP_RS15535 | Not Available | Negative | 3731605 - 3732339 | 27616.6 |
| sensor histidine kinase | PHEP_RS15540 | Not Available | Negative | 3732311 - 3733405 | 41699.7 |
| tolc family protein | PHEP_RS15545 | Not Available | Positive | 3733590 - 3734924 | 49542.8 |
| efflux rnd transporter periplasmic adaptor subunit | PHEP_RS15550 | Not Available | Positive | 3734927 - 3736177 | 45032.9 |
| abc transporter atp-binding protein | PHEP_RS15555 | Not Available | Positive | 3736174 - 3736920 | 27427.0 |
| abc transporter permease | PHEP_RS15560 | Not Available | Positive | 3736930 - 3738150 | 43652.9 |
| duf6515 family protein | PHEP_RS15565 | Not Available | Negative | 3738156 - 3738935 | 28459.5 |
| sdr family nad(p)-dependent oxidoreductase | PHEP_RS15570 | Not Available | Positive | 3739074 - 3739850 | 28285.7 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
