Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sco family protein | PHEP_RS01505 | Not Available | Positive | 351249 - 351878 | 23732.3 |
| duf420 domain-containing protein | PHEP_RS01510 | Not Available | Positive | 351891 - 352427 | 20117.7 |
| rna polymerase sigma factor | PHEP_RS01515 | Not Available | Positive | 352569 - 353180 | 23602.9 |
| fecr family protein | PHEP_RS01520 | Not Available | Positive | 353261 - 354421 | 42449.9 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS01525 | Not Available | Positive | 354721 - 358281 | 132210.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS01530 | Not Available | Positive | 358314 - 359759 | 54248.5 |
| putative zinc-binding metallopeptidase | PHEP_RS21400 | Not Available | Positive | 359777 - 361174 | 51667.3 |
| duf4302 domain-containing protein | PHEP_RS21405 | Not Available | Positive | 361200 - 362528 | 47650.7 |
| mfs transporter | PHEP_RS01545 | Not Available | Positive | 362744 - 363928 | 43502.8 |
| type 1 glutamine amidotransferase domain-containing protein | PHEP_RS01550 | Not Available | Positive | 364255 - 364953 | 26256.8 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
