Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal peptide peptidase sppa | PHEP_RS15280 | Not Available | Positive | 3672334 - 3674106 | 65438.8 |
| dna polymerase/3'-5' exonuclease polx | PHEP_RS15285 | Not Available | Positive | 3674122 - 3675798 | 62775.7 |
| duf4254 domain-containing protein | PHEP_RS15290 | Not Available | Positive | 3675818 - 3676426 | 23956.3 |
| glycosyltransferase family 9 protein | PHEP_RS15295 | Not Available | Positive | 3676423 - 3677490 | 40280.5 |
| sixa phosphatase family protein | PHEP_RS15300 | Not Available | Positive | 3677456 - 3677959 | 19113.8 |
| amp nucleosidase | PHEP_RS15305 | Not Available | Negative | 3677956 - 3678819 | 31883.8 |
| atp-dependent clp protease atp-binding subunit clpx | PHEP_RS15310 | Not Available | Negative | 3678912 - 3680153 | 45888.8 |
| atp-dependent clp endopeptidase proteolytic subunit clpp | PHEP_RS15315 | Not Available | Negative | 3680157 - 3680849 | 25574.8 |
| trigger factor | PHEP_RS15320 | Not Available | Negative | 3681032 - 3682378 | 51381.2 |
| Trna-leu | Not Available | Not Available | Positive | 3682449 - 3682530 | Not Available |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
