Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3820 family protein | PHEP_RS00105 | Not Available | Negative | 24198 - 24413 | 8313.41 |
| transcription-repair coupling factor | PHEP_RS00110 | Not Available | Negative | 24424 - 27765 | 126832.0 |
| duf2752 domain-containing protein | PHEP_RS00115 | Not Available | Positive | 27910 - 28215 | 11328.1 |
| tm2 domain-containing protein | PHEP_RS00120 | Not Available | Positive | 28234 - 28593 | 13646.9 |
| nif3-like dinuclear metal center hexameric protein | PHEP_RS00125 | Not Available | Positive | 28618 - 29715 | 40780.1 |
| zinc ribbon domain-containing protein | PHEP_RS00130 | Not Available | Positive | 29715 - 30458 | 28486.2 |
| tetratricopeptide repeat protein | PHEP_RS00135 | Not Available | Positive | 30536 - 32029 | 55903.9 |
| 3-oxoacyl-acp synthase iii family protein | PHEP_RS00140 | Not Available | Negative | 32026 - 33108 | 39348.4 |
| lutc/ykgg family protein | PHEP_RS00145 | Not Available | Negative | 33164 - 33808 | 24504.4 |
| atp-dependent zinc metalloprotease ftsh | PHEP_RS00150 | Not Available | Negative | 33864 - 35954 | 77276.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
