Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| proline--trna ligase | PHEP_RS14425 | Not Available | Negative | 3471361 - 3472833 | 55770.5 |
| hypothetical protein | PHEP_RS14430 | Not Available | Positive | 3472938 - 3473819 | 31302.2 |
| ompp1/fadl family transporter | PHEP_RS14435 | Not Available | Positive | 3473838 - 3475352 | 55014.5 |
| ubid family decarboxylase | PHEP_RS14440 | Not Available | Negative | 3475404 - 3477236 | 67934.8 |
| dps family protein | PHEP_RS14445 | Not Available | Negative | 3477330 - 3477809 | 18577.4 |
| lysm peptidoglycan-binding domain-containing protein | PHEP_RS14450 | Not Available | Positive | 3477994 - 3479175 | 43275.0 |
| uridine kinase family protein | PHEP_RS14455 | Not Available | Positive | 3479165 - 3479806 | 24706.5 |
| coa transferase subunit b | PHEP_RS14460 | Not Available | Negative | 3479803 - 3480462 | 23339.7 |
| coa transferase subunit a | PHEP_RS14465 | Not Available | Negative | 3480474 - 3481175 | 25174.5 |
| pqq-dependent sugar dehydrogenase | PHEP_RS14470 | Not Available | Negative | 3481229 - 3482326 | 39865.5 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
