Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | PHEP_RS14085 | Not Available | Negative | 3390399 - 3393548 | 115507.0 |
| glycoside hydrolase family 88 protein | PHEP_RS14090 | Not Available | Positive | 3393846 - 3395048 | 45491.8 |
| hypothetical protein | PHEP_RS14095 | Not Available | Positive | 3395303 - 3396139 | 30942.5 |
| duf6266 family protein | PHEP_RS14100 | Not Available | Negative | 3396142 - 3396768 | 22710.5 |
| nudix hydrolase | PHEP_RS14105 | Not Available | Positive | 3397066 - 3398217 | 43524.5 |
| rna polymerase sigma factor | PHEP_RS14110 | Not Available | Positive | 3398340 - 3398918 | 22534.6 |
| aaa family atpase | PHEP_RS14115 | Not Available | Positive | 3398992 - 3400263 | 48826.4 |
| hypothetical protein | PHEP_RS14120 | Not Available | Positive | 3400266 - 3400973 | 26419.5 |
| fecr family protein | PHEP_RS14125 | Not Available | Positive | 3401073 - 3402188 | 40862.5 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS14130 | Not Available | Positive | 3402407 - 3405823 | 124755.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
