Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1961 family protein | PHEP_RS14035 | Not Available | Negative | 3374663 - 3375517 | 32473.4 |
| polysaccharide lyase | PHEP_RS14040 | Not Available | Negative | 3375535 - 3376623 | 40863.8 |
| sulfatase | PHEP_RS14045 | Not Available | Negative | 3376660 - 3377361 | 26155.6 |
| duf6250 domain-containing protein | PHEP_RS14050 | Not Available | Negative | 3377427 - 3378113 | 26254.2 |
| chondroitinase family polysaccharide lyase | PHEP_RS14055 | Not Available | Negative | 3378132 - 3381365 | 120701.0 |
| glycoside hydrolase family 88 protein | PHEP_RS14060 | Not Available | Negative | 3381376 - 3382557 | 44573.9 |
| polysaccharide lyase family 8 super-sandwich domain-containing protein | PHEP_RS14065 | Not Available | Negative | 3382611 - 3385580 | 110863.0 |
| alpha-l-fucosidase | PHEP_RS14070 | Not Available | Negative | 3385601 - 3387022 | 53132.4 |
| alpha-l-fucosidase | PHEP_RS14075 | Not Available | Negative | 3387070 - 3388509 | 55278.9 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS14080 | Not Available | Negative | 3388514 - 3390382 | 69273.7 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
