Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | PHEP_RS13885 | Not Available | Positive | 3319025 - 3319999 | 33680.3 |
| fggy family carbohydrate kinase | PHEP_RS13890 | Not Available | Positive | 3320002 - 3321483 | 53551.9 |
| nucleoside hydrolase-like domain-containing protein | PHEP_RS13895 | Not Available | Positive | 3321480 - 3322775 | 48424.6 |
| voc family protein | PHEP_RS13900 | Not Available | Positive | 3322892 - 3323284 | 14126.9 |
| hypothetical protein | PHEP_RS13905 | Not Available | Negative | 3323406 - 3324356 | 35111.5 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS13910 | Not Available | Negative | 3324390 - 3326273 | 69668.4 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS13915 | Not Available | Negative | 3326284 - 3329430 | 115182.0 |
| duf3826 domain-containing protein | PHEP_RS13920 | Not Available | Negative | 3329680 - 3330354 | 25725.7 |
| fucose isomerase | PHEP_RS13925 | Not Available | Negative | 3330396 - 3332009 | 59753.2 |
| arac family transcriptional regulator | PHEP_RS13930 | Not Available | Positive | 3332253 - 3333125 | 33759.9 |
Pathways
302 pathways
Health Effects
No health effects information available for this bacterium.
