Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| six-hairpin glycosidase | PHEP_RS13785 | Not Available | Negative | 3290645 - 3292486 | 69780.1 |
| glycoside hydrolase family 43 protein | PHEP_RS13790 | Not Available | Negative | 3292520 - 3293455 | 35544.6 |
| glycoside hydrolase family 140 protein | PHEP_RS13795 | Not Available | Negative | 3293452 - 3294873 | 53913.7 |
| duf6298 domain-containing protein | PHEP_RS13800 | Not Available | Negative | 3294884 - 3298000 | 114924.0 |
| polysaccharide lyase | PHEP_RS13805 | Not Available | Negative | 3298197 - 3299822 | 58857.5 |
| lytr/algr family response regulator transcription factor | PHEP_RS13810 | Not Available | Negative | 3300061 - 3300825 | 29257.8 |
| sensor histidine kinase | PHEP_RS13815 | Not Available | Negative | 3300880 - 3301818 | 36598.2 |
| hypothetical protein | PHEP_RS13820 | Not Available | Negative | 3301819 - 3303051 | 47511.2 |
| pectate lyase | PHEP_RS13825 | Not Available | Positive | 3303295 - 3305781 | 89936.7 |
| cupin domain-containing protein | PHEP_RS13830 | Not Available | Negative | 3305839 - 3306198 | 13715.6 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
