Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | PHEP_RS13540 | Not Available | Negative | 3228523 - 3229038 | 20153.1 |
| response regulator transcription factor | PHEP_RS13545 | Not Available | Positive | 3229259 - 3229924 | 24299.6 |
| serine hydrolase domain-containing protein | PHEP_RS21680 | Not Available | Negative | 3229927 - 3231180 | 46651.4 |
| acvb/virj family lysyl-phosphatidylglycerol hydrolase | PHEP_RS13555 | Not Available | Positive | 3231566 - 3233047 | 54228.2 |
| c-type cytochrome | PHEP_RS13560 | Not Available | Positive | 3233138 - 3233536 | 15164.7 |
| zinc-binding alcohol dehydrogenase family protein | PHEP_RS13565 | Not Available | Negative | 3233539 - 3234552 | 36850.8 |
| sdr family oxidoreductase | PHEP_RS13570 | Not Available | Negative | 3234581 - 3235369 | 27883.3 |
| glycoside hydrolase family 88/105 protein | PHEP_RS13575 | Not Available | Negative | 3235381 - 3237300 | 71616.2 |
| duf5703 domain-containing protein | PHEP_RS13580 | Not Available | Negative | 3237398 - 3239710 | 87513.4 |
| sialate o-acetylesterase | PHEP_RS13585 | Not Available | Negative | 3239725 - 3241173 | 52983.3 |
Pathways
302 pathways
Health Effects
No health effects information available for this bacterium.
