Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had-ib family phosphatase | PHEP_RS01305 | Not Available | Negative | 306666 - 307964 | 49345.9 |
| nad-dependent epimerase/dehydratase family protein | PHEP_RS01310 | Not Available | Negative | 308031 - 309032 | 36464.8 |
| formimidoylglutamase | PHEP_RS01315 | Not Available | Positive | 309069 - 310250 | 44470.4 |
| tlpa disulfide reductase family protein | PHEP_RS01320 | Not Available | Positive | 310346 - 311473 | 40980.2 |
| hypothetical protein | PHEP_RS01325 | Not Available | Positive | 311631 - 312125 | 18987.8 |
| sigma factor-like helix-turn-helix dna-binding protein | PHEP_RS01330 | Not Available | Positive | 312200 - 312427 | 8936.96 |
| phosphoribosylamine--glycine ligase | PHEP_RS01335 | Not Available | Negative | 312502 - 313776 | 45583.7 |
| yeih family protein | PHEP_RS01340 | Not Available | Negative | 314053 - 314988 | 32936.2 |
| lysr family transcriptional regulator | PHEP_RS01345 | Not Available | Negative | 315069 - 315959 | 33308.6 |
| hypothetical protein | PHEP_RS01350 | Not Available | Positive | 316125 - 316424 | 11434.8 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
