Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | PHEP_RS13295 | Not Available | Positive | 3147864 - 3149093 | 44149.7 |
| fur family transcriptional regulator | PHEP_RS13300 | Not Available | Positive | 3149105 - 3149533 | 16264.7 |
| heavy metal translocating p-type atpase | PHEP_RS13305 | Not Available | Positive | 3149577 - 3151547 | 71019.9 |
| hypothetical protein | PHEP_RS13310 | Not Available | Positive | 3151659 - 3153185 | 55804.0 |
| atu2307/sp_0267 family llm class monooxygenase | PHEP_RS13315 | Not Available | Negative | 3153178 - 3154212 | 37878.7 |
| atp-dependent clp protease proteolytic subunit | PHEP_RS13320 | Not Available | Negative | 3154296 - 3154982 | 25298.5 |
| hypothetical protein | PHEP_RS22250 | Not Available | Negative | 3155056 - 3155211 | 6171.65 |
| rna polymerase sigma factor | PHEP_RS13325 | Not Available | Negative | 3155192 - 3155755 | 21176.1 |
| duf4955 domain-containing protein | PHEP_RS13330 | Not Available | Negative | 3155883 - 3157403 | 56492.0 |
| alpha-l-fucosidase | PHEP_RS13335 | Not Available | Negative | 3157681 - 3159120 | 53646.3 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
