Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | PHEP_RS13090 | Not Available | Negative | 3085585 - 3089016 | 124871.0 |
| fecr family protein | PHEP_RS13100 | Not Available | Negative | 3089287 - 3090438 | 42648.0 |
| rna polymerase sigma factor | PHEP_RS13105 | Not Available | Negative | 3090515 - 3091093 | 22438.4 |
| hybrid sensor histidine kinase/response regulator transcription factor | PHEP_RS13110 | Not Available | Negative | 3092003 - 3096094 | 155610.0 |
| glycoside hydrolase family 88 protein | PHEP_RS13115 | Not Available | Negative | 3096161 - 3097339 | 44823.0 |
| t9ss type a sorting domain-containing protein | PHEP_RS13120 | Not Available | Negative | 3097383 - 3100967 | 130401.0 |
| hypothetical protein | PHEP_RS13125 | Not Available | Positive | 3101284 - 3102828 | 56285.5 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS13130 | Not Available | Positive | 3102884 - 3106006 | 116563.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS13135 | Not Available | Positive | 3106033 - 3107751 | 65521.1 |
| heparinase ii/iii domain-containing protein | PHEP_RS13140 | Not Available | Positive | 3107776 - 3110319 | 94993.3 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
