Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf5017 domain-containing protein | PHEP_RS12895 | Not Available | Positive | 3044158 - 3045051 | 32480.7 |
| heparinase ii/iii family protein | PHEP_RS12900 | Not Available | Positive | 3045063 - 3046976 | 71284.6 |
| t9ss type a sorting domain-containing protein | PHEP_RS12905 | Not Available | Positive | 3046976 - 3050884 | 138417.0 |
| alpha-l-fucosidase | PHEP_RS12910 | Not Available | Positive | 3050901 - 3052292 | 52938.9 |
| sgnh/gdsl hydrolase family protein | PHEP_RS12915 | Not Available | Positive | 3052289 - 3053662 | 52075.8 |
| polysaccharide pyruvyl transferase family protein | PHEP_RS12920 | Not Available | Positive | 3053699 - 3054970 | 47793.9 |
| gluconate 2-dehydrogenase subunit 3 family protein | PHEP_RS12925 | Not Available | Negative | 3054979 - 3055596 | 22801.3 |
| gmc family oxidoreductase | PHEP_RS12930 | Not Available | Negative | 3055613 - 3057349 | 63908.1 |
| hypothetical protein | PHEP_RS12940 | Not Available | Positive | 3057881 - 3058168 | 10348.3 |
| gnat family n-acetyltransferase | PHEP_RS12945 | Not Available | Negative | 3058193 - 3058639 | 16908.2 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
