Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-manno-octulosonate cytidylyltransferase | PHEP_RS12800 | Not Available | Positive | 3005382 - 3006110 | 27599.1 |
| hypothetical protein | PHEP_RS12805 | Not Available | Positive | 3006139 - 3006678 | 20720.7 |
| outer membrane beta-barrel protein | PHEP_RS12810 | Not Available | Positive | 3007225 - 3010005 | 103140.0 |
| glpgli family protein | PHEP_RS12815 | Not Available | Positive | 3010009 - 3010773 | 29543.8 |
| ctp synthase | PHEP_RS12820 | Not Available | Positive | 3010930 - 3012546 | 59952.2 |
| membrane protein insertase yidc | PHEP_RS12825 | Not Available | Positive | 3012567 - 3014369 | 67873.6 |
| alpha/beta hydrolase family protein | PHEP_RS12830 | Not Available | Positive | 3014527 - 3017322 | 105776.0 |
| m14 family zinc carboxypeptidase | PHEP_RS12835 | Not Available | Positive | 3017309 - 3018487 | 44398.1 |
| nucleoside recognition domain-containing protein | PHEP_RS12840 | Not Available | Positive | 3018516 - 3019787 | 45300.8 |
| energy transducer tonb | PHEP_RS12845 | Not Available | Negative | 3019857 - 3020684 | 30095.4 |
Pathways
302 pathways
Health Effects
No health effects information available for this bacterium.
