Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase quea | PHEP_RS12755 | Not Available | Positive | 2998600 - 2999649 | 40019.1 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | PHEP_RS12760 | Not Available | Positive | 2999740 - 3000417 | 25327.5 |
| lmo0937 family membrane protein | PHEP_RS22085 | Not Available | Negative | 3000466 - 3000627 | 5717.56 |
| duf2795 domain-containing protein | PHEP_RS12765 | Not Available | Negative | 3000785 - 3001006 | 8587.66 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | PHEP_RS12770 | Not Available | Negative | 3001164 - 3001712 | 20848.4 |
| abc transporter atp-binding protein | PHEP_RS12775 | Not Available | Negative | 3001730 - 3002512 | 28573.4 |
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatc | PHEP_RS12780 | Not Available | Negative | 3002561 - 3002851 | 11164.6 |
| lysophospholipid acyltransferase family protein | PHEP_RS12785 | Not Available | Negative | 3002848 - 3003588 | 28466.0 |
| tryptophan--trna ligase | PHEP_RS12790 | Not Available | Positive | 3003720 - 3004718 | 37733.0 |
| deoxynucleoside kinase | PHEP_RS12795 | Not Available | Positive | 3004766 - 3005380 | 23799.3 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
