Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent dna ligase | PHEP_RS12705 | Not Available | Positive | 2986750 - 2988357 | 61119.6 |
| ligase-associated dna damage response dexh box helicase | PHEP_RS12710 | Not Available | Positive | 2988391 - 2990913 | 95514.0 |
| ligase-associated dna damage response endonuclease pdem | PHEP_RS12715 | Not Available | Positive | 2990903 - 2991538 | 24266.4 |
| hypothetical protein | PHEP_RS12720 | Not Available | Negative | 2991541 - 2992152 | 23601.3 |
| adenosylmethionine--8-amino-7-oxononanoate transaminase | PHEP_RS12725 | Not Available | Negative | 2992172 - 2993440 | 47505.5 |
| nudix domain-containing protein | PHEP_RS12730 | Not Available | Negative | 2993437 - 2993877 | 16826.0 |
| cation diffusion facilitator family transporter | PHEP_RS12735 | Not Available | Negative | 2993877 - 2994854 | 36512.6 |
| pyridoxal phosphate-dependent aminotransferase | PHEP_RS12740 | Not Available | Positive | 2994989 - 2996182 | 43674.1 |
| abc transporter permease | PHEP_RS12745 | Not Available | Negative | 2996386 - 2997627 | 45598.6 |
| hypothetical protein | PHEP_RS12750 | Not Available | Negative | 2997718 - 2998416 | 24826.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
