Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4249 domain-containing protein | PHEP_RS12650 | Not Available | Negative | 2969560 - 2970342 | 28748.1 |
| tonb-dependent receptor | PHEP_RS12655 | Not Available | Negative | 2970347 - 2972674 | 87255.3 |
| lrp/asnc family transcriptional regulator | PHEP_RS12665 | Not Available | Positive | 2972951 - 2973415 | 17637.3 |
| glycosyl hydrolase | PHEP_RS12670 | Not Available | Negative | 2973438 - 2976602 | 119307.0 |
| glycoside hydrolase family 43 protein | PHEP_RS12675 | Not Available | Negative | 2976645 - 2977571 | 35266.6 |
| duf4998 domain-containing protein | PHEP_RS12680 | Not Available | Negative | 2977855 - 2978982 | 41541.2 |
| duf5000 domain-containing lipoprotein | PHEP_RS12685 | Not Available | Negative | 2979011 - 2980207 | 43888.1 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS12690 | Not Available | Negative | 2980251 - 2982140 | 72033.7 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS12695 | Not Available | Negative | 2982147 - 2985326 | 117282.0 |
| ligase-associated dna damage response exonuclease | PHEP_RS12700 | Not Available | Positive | 2985768 - 2986766 | 36569.4 |
Pathways
302 pathways
Health Effects
No health effects information available for this bacterium.
