Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter permease subunit | PHEP_RS12600 | Not Available | Negative | 2955725 - 2958745 | 110214.0 |
| efflux rnd transporter periplasmic adaptor subunit | PHEP_RS12605 | Not Available | Negative | 2958742 - 2959668 | 33390.8 |
| tolc family protein | PHEP_RS12610 | Not Available | Negative | 2959677 - 2960924 | 47475.2 |
| phosphatase pap2 family protein | PHEP_RS12615 | Not Available | Negative | 2960929 - 2961657 | 26289.5 |
| enoyl-coa hydratase/isomerase family protein | PHEP_RS12620 | Not Available | Positive | 2961846 - 2962625 | 28135.0 |
| hypothetical protein | PHEP_RS12625 | Not Available | Positive | 2962642 - 2963319 | 24644.0 |
| lta synthase family protein | PHEP_RS12630 | Not Available | Positive | 2963332 - 2965197 | 70567.8 |
| s9 family peptidase | PHEP_RS12635 | Not Available | Positive | 2965202 - 2967379 | 82389.7 |
| aldose 1-epimerase family protein | PHEP_RS12640 | Not Available | Positive | 2967417 - 2968286 | 33210.4 |
| gaf domain-containing sensor histidine kinase | PHEP_RS12645 | Not Available | Negative | 2968283 - 2969479 | 44615.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
