Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | PHEP_RS12550 | Not Available | Negative | 2941243 - 2941830 | 22838.5 |
| tonb-dependent receptor | PHEP_RS12555 | Not Available | Positive | 2942020 - 2944422 | 88526.1 |
| atp-binding protein | PHEP_RS12560 | Not Available | Negative | 2944430 - 2946061 | 60926.1 |
| alanine--trna ligase | PHEP_RS12565 | Not Available | Negative | 2946140 - 2948842 | 101965.0 |
| merr family transcriptional regulator | PHEP_RS12570 | Not Available | Positive | 2948979 - 2949314 | 13114.9 |
| hypothetical protein | PHEP_RS12575 | Not Available | Positive | 2949383 - 2951410 | 77224.5 |
| comec/rec2 family competence protein | PHEP_RS12580 | Not Available | Positive | 2951530 - 2953224 | 64654.1 |
| sensor histidine kinase | PHEP_RS12585 | Not Available | Negative | 2953227 - 2954480 | 47773.0 |
| response regulator transcription factor | PHEP_RS12590 | Not Available | Negative | 2954477 - 2955172 | 25960.5 |
| eama family transporter | PHEP_RS12595 | Not Available | Positive | 2955297 - 2955713 | 14863.8 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
