Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr substrate-binding domain-containing protein | PHEP_RS12000 | Not Available | Positive | 2817433 - 2818335 | 34408.9 |
| hypothetical protein | PHEP_RS12005 | Not Available | Positive | 2818266 - 2818766 | 19274.3 |
| bama/tama family outer membrane protein | PHEP_RS12010 | Not Available | Positive | 2818864 - 2820162 | 48454.6 |
| hypothetical protein | PHEP_RS12015 | Not Available | Negative | 2820187 - 2820720 | 20274.0 |
| duf4142 domain-containing protein | PHEP_RS12020 | Not Available | Negative | 2820795 - 2821493 | 25171.5 |
| cdgsh iron-sulfur domain-containing protein | PHEP_RS12025 | Not Available | Negative | 2821600 - 2821824 | 8119.67 |
| hypothetical protein | PHEP_RS21650 | Not Available | Negative | 2821907 - 2823337 | 54715.3 |
| nuclear transport factor 2 family protein | PHEP_RS12035 | Not Available | Negative | 2823423 - 2823848 | 15989.0 |
| mfs transporter | PHEP_RS12040 | Not Available | Positive | 2824003 - 2825220 | 44665.8 |
| arabinose isomerase | PHEP_RS12045 | Not Available | Negative | 2825225 - 2826706 | 53956.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
