Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PHEP_RS11900 | Not Available | Positive | 2796194 - 2796412 | 7942.23 |
| hypothetical protein | PHEP_RS11905 | Not Available | Positive | 2796471 - 2796707 | 8886.13 |
| secondary thiamine-phosphate synthase enzyme yjbq | PHEP_RS11910 | Not Available | Negative | 2796735 - 2797157 | 15912.0 |
| decarboxylating nadp(+)-dependent phosphogluconate dehydrogenase | PHEP_RS11915 | Not Available | Negative | 2797235 - 2798689 | 52729.4 |
| ompa family protein | PHEP_RS11920 | Not Available | Positive | 2798827 - 2799354 | 19548.4 |
| dinb family protein | PHEP_RS11925 | Not Available | Positive | 2799354 - 2799797 | 16632.9 |
| hypothetical protein | PHEP_RS11930 | Not Available | Negative | 2799810 - 2800547 | 27965.1 |
| heparin/heparin-sulfate lyase hepb | PHEP_RS11935 | Not Available | Negative | 2800682 - 2803000 | 87631.0 |
| heparinase ii/iii domain-containing protein | PHEP_RS11940 | Not Available | Negative | 2803143 - 2805599 | 92342.0 |
| duf1801 domain-containing protein | PHEP_RS11945 | Not Available | Negative | 2805729 - 2806121 | 14951.9 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
