Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS11650 | Not Available | Negative | 2745012 - 2746376 | 51402.7 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS11655 | Not Available | Negative | 2746399 - 2749656 | 119905.0 |
| tlpa family protein disulfide reductase | PHEP_RS11660 | Not Available | Negative | 2749658 - 2750227 | 21708.5 |
| carboxypeptidase-like regulatory domain-containing protein | PHEP_RS11665 | Not Available | Negative | 2750329 - 2750880 | 20940.9 |
| fecr family protein | PHEP_RS11670 | Not Available | Negative | 2751074 - 2752111 | 38729.8 |
| rna polymerase sigma factor | PHEP_RS11675 | Not Available | Negative | 2752296 - 2752898 | 23261.4 |
| Trna-glu | Not Available | Not Available | Positive | 2753003 - 2753077 | Not Available |
| chromosomal replication initiator protein dnaa | PHEP_RS11685 | Not Available | Negative | 2753213 - 2754643 | 53946.2 |
| pseudouridine synthase | PHEP_RS11690 | Not Available | Negative | 2754842 - 2755519 | 25934.6 |
| duf6266 family protein | PHEP_RS11695 | Not Available | Positive | 2755880 - 2756542 | 24413.3 |
Pathways
302 pathways
Health Effects
No health effects information available for this bacterium.
