Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS11395 | Not Available | Negative | 2669478 - 2671367 | 71370.6 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS11400 | Not Available | Negative | 2671379 - 2674597 | 118518.0 |
| glycoside hydrolase family 88/105 protein | PHEP_RS11405 | Not Available | Negative | 2675070 - 2676161 | 41233.5 |
| hypothetical protein | PHEP_RS11410 | Not Available | Negative | 2676179 - 2677546 | 51785.4 |
| hypothetical protein | PHEP_RS11415 | Not Available | Negative | 2677613 - 2679376 | 68197.3 |
| alpha-l-rhamnosidase c-terminal domain-containing protein | PHEP_RS11420 | Not Available | Negative | 2679376 - 2681094 | 64069.3 |
| glycosyl hydrolase | PHEP_RS11425 | Not Available | Negative | 2681101 - 2684313 | 119606.0 |
| glycoside hydrolase family 88/105 protein | PHEP_RS11430 | Not Available | Negative | 2684503 - 2685663 | 43847.7 |
| sialate o-acetylesterase | PHEP_RS11440 | Not Available | Negative | 2685884 - 2687341 | 53754.0 |
| hypothetical protein | PHEP_RS11445 | Not Available | Negative | 2687356 - 2688585 | 44675.1 |
Pathways
302 pathways
Health Effects
No health effects information available for this bacterium.
