Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein-disulfide reductase dsbd n-terminal domain-containing protein | PHEP_RS11190 | Not Available | Negative | 2622026 - 2622472 | 16489.1 |
| tolc family protein | PHEP_RS11195 | Not Available | Negative | 2622579 - 2623988 | 51315.1 |
| efflux rnd transporter permease subunit | PHEP_RS11200 | Not Available | Negative | 2624013 - 2627204 | 115316.0 |
| efflux rnd transporter periplasmic adaptor subunit | PHEP_RS11205 | Not Available | Negative | 2627229 - 2628362 | 40332.6 |
| tetr/acrr family transcriptional regulator | PHEP_RS11210 | Not Available | Negative | 2628519 - 2629118 | 23502.5 |
| laci family dna-binding transcriptional regulator | PHEP_RS11215 | Not Available | Positive | 2629407 - 2630447 | 38229.0 |
| mannonate dehydratase | PHEP_RS11220 | Not Available | Negative | 2630484 - 2631659 | 43920.5 |
| sdr family oxidoreductase | PHEP_RS11225 | Not Available | Negative | 2631682 - 2632503 | 28828.4 |
| sugar kinase | PHEP_RS11230 | Not Available | Positive | 2632678 - 2633673 | 36766.6 |
| hypothetical protein | PHEP_RS11235 | Not Available | Positive | 2633711 - 2634364 | 23928.1 |
Pathways
302 pathways
Health Effects
No health effects information available for this bacterium.
