Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor | PHEP_RS11140 | Not Available | Positive | 2607323 - 2607895 | 22278.2 |
| sulfatase | PHEP_RS11145 | Not Available | Negative | 2607917 - 2609398 | 55116.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS11150 | Not Available | Negative | 2609745 - 2611487 | 66103.4 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS11155 | Not Available | Negative | 2611544 - 2615116 | 133438.0 |
| fecr family protein | PHEP_RS11160 | Not Available | Negative | 2615235 - 2616419 | 44933.5 |
| rna polymerase sigma factor | PHEP_RS11165 | Not Available | Negative | 2616493 - 2617074 | 22730.8 |
| phosphatase pap2-related protein | PHEP_RS11170 | Not Available | Positive | 2617357 - 2617977 | 23552.9 |
| lytr/algr family response regulator transcription factor | PHEP_RS11175 | Not Available | Positive | 2618365 - 2619111 | 28662.1 |
| sensor histidine kinase | PHEP_RS11180 | Not Available | Positive | 2619163 - 2620251 | 41925.7 |
| protein-disulfide reductase dsbd family protein | PHEP_RS11185 | Not Available | Negative | 2620321 - 2622018 | 60645.1 |
Pathways
302 pathways
Health Effects
No health effects information available for this bacterium.
