Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate reductase/succinate dehydrogenase flavoprotein subunit | PHEP_RS01055 | Not Available | Positive | 247508 - 249487 | 73307.0 |
| succinate dehydrogenase/fumarate reductase iron-sulfur subunit | PHEP_RS01060 | Not Available | Positive | 249497 - 250267 | 28021.6 |
| m56 family metallopeptidase | PHEP_RS01065 | Not Available | Negative | 250351 - 252357 | 74185.3 |
| blai/meci/copy family transcriptional regulator | PHEP_RS01070 | Not Available | Negative | 252354 - 252731 | 14865.9 |
| hypothetical protein | PHEP_RS22130 | Not Available | Negative | 253020 - 253193 | 6175.84 |
| sensor histidine kinase | PHEP_RS01075 | Not Available | Positive | 253492 - 254526 | 39742.6 |
| lytr/algr family response regulator transcription factor | PHEP_RS01080 | Not Available | Positive | 254523 - 255275 | 28603.8 |
| lysophospholipid acyltransferase family protein | PHEP_RS01085 | Not Available | Negative | 255280 - 256029 | 28564.1 |
| nudix domain-containing protein | PHEP_RS01090 | Not Available | Negative | 256032 - 256586 | 20708.4 |
| outer membrane beta-barrel protein | PHEP_RS01095 | Not Available | Negative | 256620 - 259034 | 88757.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
