Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific tyrosine recombinase xerd | PHEP_RS10790 | Not Available | Positive | 2499953 - 2500852 | 33734.8 |
| peptide chain release factor n(5)-glutamine methyltransferase | PHEP_RS10795 | Not Available | Negative | 2500856 - 2501722 | 32117.8 |
| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribd | PHEP_RS10800 | Not Available | Positive | 2501782 - 2502843 | 39467.4 |
| transporter | PHEP_RS10805 | Not Available | Positive | 2502840 - 2503730 | 33376.7 |
| impact family protein | PHEP_RS10810 | Not Available | Positive | 2503749 - 2504363 | 22764.5 |
| nucleoside phosphorylase | PHEP_RS10815 | Not Available | Positive | 2504385 - 2505251 | 31687.3 |
| hypothetical protein | PHEP_RS10820 | Not Available | Positive | 2505327 - 2505644 | 11665.4 |
| gh92 family glycosyl hydrolase | PHEP_RS10825 | Not Available | Negative | 2505759 - 2508086 | 87421.5 |
| trna 2-thiouridine(34) synthase mnma | PHEP_RS10830 | Not Available | Positive | 2508406 - 2509497 | 40532.3 |
| bifunctional metallophosphatase/5'-nucleotidase | PHEP_RS10835 | Not Available | Negative | 2509504 - 2510451 | 34847.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
