Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate synthase subunit beta | PHEP_RS10580 | Not Available | Positive | 2456738 - 2458204 | 53371.1 |
| rna methyltransferase | PHEP_RS10585 | Not Available | Negative | 2458277 - 2458807 | 19632.7 |
| galactokinase | PHEP_RS10590 | Not Available | Negative | 2458823 - 2459974 | 42579.0 |
| aldose epimerase family protein | PHEP_RS10595 | Not Available | Positive | 2460150 - 2461187 | 38562.1 |
| dsba family oxidoreductase | PHEP_RS10600 | Not Available | Positive | 2461187 - 2461828 | 24314.9 |
| rna polymerase sigma factor | PHEP_RS10605 | Not Available | Positive | 2461867 - 2462445 | 22619.7 |
| fecr family protein | PHEP_RS10610 | Not Available | Positive | 2462530 - 2463666 | 41868.2 |
| tonb-dependent receptor | PHEP_RS10615 | Not Available | Positive | 2463933 - 2467241 | 122097.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS10620 | Not Available | Positive | 2467299 - 2468888 | 59240.5 |
| duf6528 family protein | PHEP_RS10625 | Not Available | Positive | 2468903 - 2469907 | 36632.7 |
Pathways
302 pathways
Health Effects
No health effects information available for this bacterium.
