Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PHEP_RS01005 | Not Available | Negative | 232716 - 233423 | 26024.8 |
| sensor histidine kinase | PHEP_RS01010 | Not Available | Positive | 233558 - 235402 | 69798.8 |
| response regulator transcription factor | PHEP_RS01015 | Not Available | Positive | 235399 - 236094 | 26533.4 |
| glpgli family protein | PHEP_RS01020 | Not Available | Negative | 236091 - 236861 | 28657.6 |
| outer membrane beta-barrel family protein | PHEP_RS01025 | Not Available | Negative | 236867 - 239659 | 103903.0 |
| duf4153 domain-containing protein | PHEP_RS01030 | Not Available | Positive | 239819 - 241636 | 68629.1 |
| helix-turn-helix domain-containing protein | PHEP_RS01035 | Not Available | Positive | 241660 - 243954 | 86627.3 |
| diaminopimelate epimerase | PHEP_RS01040 | Not Available | Negative | 243974 - 244759 | 29219.4 |
| trypsin-like peptidase domain-containing protein | PHEP_RS01045 | Not Available | Positive | 244910 - 246463 | 54324.7 |
| succinate dehydrogenase cytochrome b subunit | PHEP_RS01050 | Not Available | Positive | 246811 - 247491 | 25110.5 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
