Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histone deacetylase | PHEP_RS10130 | Not Available | Positive | 2360034 - 2360933 | 33233.0 |
| dna topoisomerase 3 | PHEP_RS10135 | Not Available | Positive | 2360936 - 2362762 | 68063.9 |
| aminotransferase class iv | PHEP_RS10140 | Not Available | Negative | 2362766 - 2363605 | 31235.4 |
| p1 family peptidase | PHEP_RS10145 | Not Available | Negative | 2363605 - 2364735 | 39247.5 |
| mbl fold metallo-hydrolase | PHEP_RS10150 | Not Available | Positive | 2364882 - 2365973 | 40944.7 |
| hypothetical protein | PHEP_RS10155 | Not Available | Positive | 2366033 - 2366410 | 14568.7 |
| hypothetical protein | PHEP_RS10160 | Not Available | Positive | 2366401 - 2367201 | 30193.9 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | PHEP_RS10165 | Not Available | Positive | 2367202 - 2368125 | 35213.9 |
| outer membrane beta-barrel protein | PHEP_RS10170 | Not Available | Positive | 2368223 - 2368735 | 17439.9 |
| duf3347 domain-containing protein | PHEP_RS10175 | Not Available | Positive | 2368836 - 2369369 | 19207.2 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
